Shell Programming and Scripting

  
 complinagetest () #function name
 {
 if [ -f complins.dat ];then
 rm complins.dat
 fi
 touch complins.dat


 i=0
 while read line
 do
 if [ $line == "SNA" ]; then
  
  va=`grep -w "$line" datalins1.dat | awk  BEGIN'{FS="\`~"}{if ( $3=="'$line'"  ) {print $4}}'`
  i=$(($i+1))
  varits=$(echo $va|awk -v varif="$i" '{print $varif}')
  
       if [ "$varits" = "DNA" ]; then
           grep -w "$varits" datalins1.dat | awk  BEGIN'{FS="`~"}{if (  $3=="'$line'" ) {print $1}}'|sed 's/$/~>/' >> complins.dat
         else 
        grep -w "$varits" datalins1.dat | awk  BEGIN'{FS="`~"}{if (  $3=="'$line'" ) {print $1}}'| tr '\n' '~' | sed 's/~/~>/g'   >>  complins.dat
  
  
  while [ "$varits" != "DNA" ]
  do
  
                 while read line
                 do
  
                   if [ $line == "$varits" ] ; then
                 varits=`grep -w "$line" datalins1.dat | awk   BEGIN'{FS="\`~"}{if ( $3=='$line' ) {print $4}}'`
                 check=`echo $varits|awk '{print NF}'`
  
                         if [ "$check" == "1" ];then 
                 echo "inside if"                  
                 grep -w "$varits" datalins1.dat  | awk  BEGIN'{FS="`~"}{if (  $3=='$line' ) {print $1}}'| tr '\n' '~'| sed 's/~/~>/' >>  complins.dat
  
                         else
  
     echo "problem occurs here in else case when $check > 1(ie. $4 from  datalins1.dat has two number for same value of $1)"
  
                          fi
  
                 fi
  
                 done < source.dat
  
  done
       fi
 echo "" >> complins.dat
 fi
 done < source.dat
  
 }
  
 complinagetest #calling function

 #datalins1.dat
 14`~abc`~9`~11
 14`~abc`~9`~10
 36`~ee`~7`~9
 36`~ee`~8`~9
 58`~rtt`~12`~7
 70`~gff`~13`~8
 86`~tyu`~6`~12
 86`~tyu`~6`~13
 92`~mjh`~5`~6
 28`~jkl`~10`~DNA
 32`~mjk`~SNA`~5
 82`~jkli`~11`~DNA

 #source.dat
 9
 7
 8
 12
 13
 6
 5
 10
 SNA
 11

 #complins.dat
 32~92~86~58~36~14~82
 32~92~86~58~36~14~28
 32~92~86~70~36~14~82
 32~92~86~70~36~14~28