Merging two files in awk


 
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# 1  
Old 10-21-2012
Merging two files in awk

Hi,

How I can merge two file columns such as the followings using awk:
file 1
2 3
2 2
1 1
file 2
4 3
4 5
7 6

Result:
2 3 4 3
2 2 4 5
1 1 7 6

This is an example, at the end, I will have about 25 files that I want to merge them, it is important for me that the order in the columns merged will be the order of the files.

Sorry for my simple questions but I am so new in programming and awk but I have to do a lot.

Thank you so much.
# 2  
Old 10-21-2012
You can use paste command to achieve this:-

Code:
paste file1 file2

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# 3  
Old 10-21-2012
My files will be so huge, of about 50 fields and 400,000 rows, using paste, won't it take too much of the memory?
# 4  
Old 10-21-2012
I'm not sure about the memory utilization. If you insist a solution using awk here it is:-

Code:
awk 'NR==FNR{a[FNR]=$0;next} {print a[FNR], $0 } ' file1 file2

This User Gave Thanks to Yoda For This Post:
# 5  
Old 10-21-2012
that works perfect, thank you so much.
# 6  
Old 10-21-2012
Alternative awk:
Code:
awk '{getline $(NF+1)<f}1' f=file2 file1

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# 7  
Old 10-21-2012
It works well with 2 files but when I add a third file with the same number of lines but different number of columns, that is for example:
snp123
snp456
snp789

it doesn't work. Also, when I want to add three files like each other for example:
1 2
1 2
2 3

it also doesn't give me the right file format.

What I want to do finally is merging one file with one column and 25 files each with 2 columns into each other, at the end I will have a file with 26 columns and the number of rows of all files are equal.

Thank you so much for your help.
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