Join two files with common and range identifiers


 
Thread Tools Search this Thread
Top Forums Shell Programming and Scripting Join two files with common and range identifiers
# 8  
Old 07-24-2012
Didnt work

The solution didn't work. The second file xyz.txt is a master file and multiple records from abc.txt match at least one record from xyz.txt
# 9  
Old 07-25-2012
Code:
awk 'NR == FNR {
  k[NR] = $2
  b[NR] = $3
  e[NR] = $4
  m[NR] = $1 " " $3 " " $4
  next
}
{
  for (i = 1; i in m; ++i) {
    if ($2 == k[i] && $3 >= b[i] && $3 <= e[i])
      print $0, m[i]
  }
}' xyz.txt abc.txt

# 10  
Old 07-25-2012
Quote:
Originally Posted by cfiles2012
The solution didn't work.
In what way did it "not work"?
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Linux - Join 2 csv files with common key

Hi, I am trying to join 2 csv files, to create a 3rd output file with the joined data. Below is an example of my Input Data: Input File 1 NAME, FAV_FOOD, FAV_DRINK, ID, GENDER Bob, Fish, Coke, 1, M Lisa, Rice, Water, 2, F Jenny, Noodle, Tea, 3, F Ken, Pizza, Coffee, 4, M Lisa,... (7 Replies)
Discussion started by: RichZR
7 Replies

2. Shell Programming and Scripting

Merging files with common IDs without JOIN

Hi, I am trying to merge information across 2 files. The first file is a "master" file, with all IDS. File 2 contains a subset of IDs of those in File 1. I would like to match up individuals in File 1 and File 2, and add information in File 2 to that of File 1 if they appear. However, if an... (3 Replies)
Discussion started by: hubleo
3 Replies

3. UNIX for Dummies Questions & Answers

How to join 2 .txt files based on a common column?

Hi all, I'm trying to join two .txt file tab delimitated based on a common column. File 1 transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00 comp1000297_c0_seq1 ... (1 Reply)
Discussion started by: alisrpp
1 Replies

4. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

5. UNIX for Dummies Questions & Answers

how to join two files using "Join" command with one common field in this problem?

file1: Toronto:12439755:1076359:July 1, 1867:6 Quebec City:7560592:1542056:July 1, 1867:5 Halifax:938134:55284:July 1, 1867:4 Fredericton:751400:72908:July 1, 1867:3 Winnipeg:1170300:647797:July 15, 1870:7 Victoria:4168123:944735:July 20, 1871:10 Charlottetown:137900:5660:July 1, 1873:2... (2 Replies)
Discussion started by: mindfreak
2 Replies

6. Shell Programming and Scripting

join files based on a common field

Hi experts, Would you please help me with this? I have several files and I need to join the forth field of them based on the common first field. here's an example... first file: 280346 39.88 -75.08 547.8 280690 39.23 -74.83 538.7 280729 40.83 -75.08 499.2 280907 40.9 -74.4 507.8... (5 Replies)
Discussion started by: GoldenFire
5 Replies

7. Web Development

Perl join two files by "common" column

Hello; I am posting to get any help on my code that I have been struggling for some time. The project is to join two files each with 80k~180k rows. I want to merge them together by the shared common column. The problem of the shared column is partially matching, not exactly the same. File1:... (5 Replies)
Discussion started by: yifangt
5 Replies

8. Shell Programming and Scripting

Join multiple files based on 1 common column

I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ? file1 ax100 20 30 40 ax200 22 33 44 file2 ax100 10 20 40 ax200 12 13 44 file2 ax100 0 0 4 ax200 2 3 4 (9 Replies)
Discussion started by: quincyjones
9 Replies

9. Shell Programming and Scripting

"Join" or "Merge" more than 2 files into single output based on common key (column)

Hi All, I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations: 1. I am restrained to 2 input files only. 2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Discussion started by: Katabatic
1 Replies

10. Shell Programming and Scripting

List of common identifiers

Hi all, I have 4 file and I want to find the common identifier in each file. For example: FILE1 goat door bear cat FILE2 goat moose dog cat FILE3 goat yak tiger (6 Replies)
Discussion started by: phil_heath
6 Replies
Login or Register to Ask a Question