finding matches between multiple files from different directories
Hi all...
Can somebody pls help me with this...
I have a directory (dir1) which has many subdirectories(vr001,vr002,vr003..) with each subdir containing similar text file(say ras.txt).
I have another directory(dir2) which has again got some subdir(vr001c,vr002c,vr003c..) with each subdir containing three text files(r1.txt,r2.txt,r3.txt).
Now i want to do something like this for all the subdirectories in dir1:
Code:
comm -12<(ls ~/dir1/sub1/ras.txt) <(ls ~/dir2/sub1c/r1.txt)
comm -12<(ls ~/dir1/sub1/ras.txt) <(ls ~/dir2/sub1c/r2.txt)
comm -12<(ls ~/dir1/sub1/ras.txt) <(ls ~/dir2/sub1c/r3.txt)
(i do not know if its right!!)
I have two questions:
1)How to find the matched lines in the two text files
2) How to pipe the corresponding output to a new file(eg. newr1.txt,newr2.txt,newr3.txt) for all the subdirectories in dir1.
NOTE: the names of the subdirectories in dir1 and dir2 are similar(eg: vr001 and vr001clusters)
Pls help me!!
Sample content of files:
ras.txt
Code:
#!rasmol -script
zap
load inline
select all
exit
HEADER Model of O957
REMARK 220 SCORE: 0.92
REMARK 220 ZDOPE: -0.7
REMARK 220 EVALUE: 0
REMARK 220 TEMPLATE PDB: 2g38
REMARK 220 TEMPLATE CHAIN: B
REMARK 220 TARGET LENGTH: 409
ATOM 1 N PHE 1 9.735 29.148 72.991 1.00 41.06 1SG 2
ATOM 2 CA PHE 1 10.609 27.961 72.870 1.00 41.06 1SG 3
ATOM 3 CB PHE 1 9.958 26.763 73.577 1.00 41.06 1SG 4
ATOM 4 CG PHE 1 9.871 27.129 75.019 1.00 41.06 1SG 5
ATOM 5 CD1 PHE 1 10.985 27.086 75.826 1.00 41.06 1SG 6
ATOM 6 CD2 PHE 1 8.667 27.510 75.564 1.00 41.06 1SG 7
ATOM 7 CE1 PHE 1 10.893 27.426 77.157 1.00 41.06 1SG 8
ATOM 8 CE2 PHE 1 8.570 27.850 76.893 1.00 41.06 1SG 9
ATOM 9 CZ PHE 1 9.687 27.810 77.693 1.00 41.06 1SG 10
ATOM 10 C PHE 1 10.823 27.638 71.429 1.00 41.06 1SG 11
r1.txt
Code:
ATOM 1 N PHE 1 9.735 29.148 72.991 1.00 41.06 1SG 2
ATOM 2 CA PHE 1 10.609 27.961 72.870 1.00 41.06 1SG 3
ATOM 3 CB PHE 1 9.958 26.763 73.577 1.00 41.06 1SG 4
ATOM 4 CG PHE 1 9.871 27.129 75.019 1.00 41.06 1SG 5
ATOM 6 CD2 PHE 1 8.667 27.510 75.564 1.00 41.06 1SG 7
ATOM 8 CE2 PHE 1 8.570 27.850 76.893 1.00 41.06 1SG 9
ATOM 9 CZ PHE 1 9.687 27.810 77.693 1.00 41.06 1SG 10
ATOM 10 C PHE 1 10.823 27.638 71.429 1.00 41.06 1SG 11
ATOM 11 O PHE 1 11.653 26.802 71.077 1.00 41.06 1SG 12
ATOM 14 C GLY 2 11.511 28.683 68.741 1.00 34.54 1SG 15
ATOM 15 O GLY 2 12.041 28.302 67.700 1.00 34.54 1SG 16
ATOM 16 N ALA 3 12.083 29.612 69.526 1.00 22.67 1SG 17
ATOM 17 CA ALA 3 13.389 30.104 69.204 1.00 22.67 1SG18
ATOM 20 O ALA 3 15.218 28.819 68.407 1.00 22.67 1SG 21
ATOM 21 N LEU 4 14.259 28.124 70.328 1.00 86.18 1SG 22
Moderator's Comments:
Please use code tags! Also please do not overly use font formattings, thanks. You also got a PM with an explanation.
Last edited by zaxxon; 03-29-2012 at 04:15 AM..
Reason: code tags, font formattings
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