Login or Register to Ask a Question and Join Our Community


Shell Programming and Scripting

Awk Search text string in field, not all in field.

Login to Discuss or Reply to this Discussion in Our Community

 
Thread Tools Search this Thread
Top Forums Shell Programming and Scripting Awk Search text string in field, not all in field.
# 1  
Old 09-10-2011
Awk Search text string in field, not all in field.
Hello, I am using awk to match text in a tab separated field and am able to do so when matching the exact word. My problem is that I would like to match any sequence of text in the tab-separated field without having to match it all. Any help will be appreciated. Please see the code below.

Code:
awk -F'[\t]' 'NR==FNR{a[$0]; next} $6 in a{print > "/path/output_file"}' /path/list_of_text_to_match /path/list_of_text_to_search_from

Thanks in advance!
# 2  
Old 09-11-2011
Try this:
Code:
grep -f strings.txt <(awk -F"\t" '{print $6}' input.txt)

where strings.txt contains the strings to search for, one per line.
# 3  
Old 09-11-2011
Code:
grep -f strings.txt <(awk -F"\t" '{print $6}' input.txt)

This is mostly what I am looking for. How can I modify this to print the whole line instead of just tab separated field 6?
# 4  
Old 09-12-2011
Hmm... I think using just awk may be easier after all:

Code:
awk -F"\t" 'BEGIN{
  while(getline < "strings.txt")
     a[$0]=$0 }  #read in the strings and store in array
{
  for(i in a)        #loop through stored string
    if($6~a[i])    
      {print $0; next}   #match; print and go to next line
}' input.txt

Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. UNIX for Beginners Questions & Answers

Problem with getting awk to multiply a field by a value set based on condition of another field

Hi, So awk is driving me crazy on this one. I have searched everywhere and read man, docs and every related post Google can find and still no luck. The actual files I need to run this on are sensitive in nature, but it is the same thing as if I needed to calculate weighted grades for multiple... (15 Replies)
Discussion started by: cotilloe
15 Replies

2. Shell Programming and Scripting

awk to update field using matching value in file1 and substring in field in file2

In the awk below I am trying to set/update the value of $14 in file2 in bold, using the matching NM_ in $12 or $9 in file2 with the NM_ in $2 of file1. The lengths of $9 and $12 can be variable but what is consistent is the start pattern will always be NM_ and the end pattern is always ;... (2 Replies)
Discussion started by: cmccabe
2 Replies

3. Shell Programming and Scripting

awk to adjust coordinates in field based on sequential numbers in another field

I am trying to output a tab-delimited result that uses the data from a tab-delimited file to combine and subtract specific lines. If $4 matches in each line then the first matching sequential $6 value is added to $2, unless the value is 1, then the original $2 is used (like in the case of line... (3 Replies)
Discussion started by: cmccabe
3 Replies

4. Shell Programming and Scripting

awk to parse field and include the text of 1 pipe in field 4

I am trying to parse the input in awk to include the |gc= in $4 but am not able to. The below is close: awk so far: awk '{sub(/\|]+]++/, ""); print }' input.txt Input chr1 955543 955763 AGRN-6|pr=2|gc=75 0 + chr1 957571 957852 AGRN-7|pr=3|gc=61.2 0 + chr1 970621 ... (7 Replies)
Discussion started by: cmccabe
7 Replies

5. Shell Programming and Scripting

awk repeat one field at all lines and modify field repetitions

Hello experts I have a file with paragraphs begining with a keeping date and ending with "END": 20120301 num num John num num A keepnum1 num num kathrin num num A keepnum1 num num kathrin num num B keepnum2 num num Pete num num A keepnum1 num num Jacob num... (2 Replies)
Discussion started by: phaethon
2 Replies

6. Linux

How do I format a Date field of a .CSV file with multiple commas in a string field?

I have a .CSV file (file.csv) whose data are all enclosed in double quotes. Sample format of the file is as below: column1,column2,column3,column4,column5,column6, column7, Column8, Column9, Column10 "12","B000QRIGJ4","4432","string with quotes, and with a comma, and colon: in... (3 Replies)
Discussion started by: dhruuv369
3 Replies

7. Shell Programming and Scripting

Search field in text file and replace value

Hi there, First of all this is my first post here. Thank you in advance for your help. What I am trying to do is the following. I have a text file where each field of each row is separated by a tabulator. Looks like this: ATOM 1 N HSE A 26 3.033 -10.429 -2.262 1.00 17.07 ... (8 Replies)
Discussion started by: doom4
8 Replies

8. Shell Programming and Scripting

Search a string,get line and replace with second field

Hi, I need to search for source path in file2 , as per file1 and if found get the next line and take the field value and put it in URL value of file1. In file1, NF is not same for all the lines. file1: <type source="/home/USER/Desktop" Dest="/home/USER/DIR1/Desktop" URL="ssh/path"/> <type... (8 Replies)
Discussion started by: greet_sed
8 Replies

9. Shell Programming and Scripting

AWK: Pattern match between 2 files, then compare a field in file1 as > or < field in file2

First, thanks for the help in previous posts... couldn't have gotten where I am now without it! So here is what I have, I use AWK to match $1 and $2 as 1 string in file1 to $1 and $2 as 1 string in file2. Now I'm wondering if I can extend this AWK command to incorporate the following: If $1... (4 Replies)
Discussion started by: right_coaster
4 Replies

10. Shell Programming and Scripting

awk, comma as field separator and text inside double quotes as a field.

Hi, all I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes. sample input: for this line, 5 fields are supposed to be extracted, they... (8 Replies)
Discussion started by: kevintse
8 Replies
Login or Register to Ask a Question