10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hello all, I am having trouble with what should be an easy task, but seem to be missing something fundamental. I have two files, with File 1 consisting of a single field of many thousands of records. I also have File 2 with two fields and many thousands of records.
My goal is that when $1 of... (2 Replies)
Discussion started by: jvoot
2 Replies
2. UNIX for Beginners Questions & Answers
Hi,
I have 2 tab-delimited input files as follows.
file1.tab:
green A apple
red B apple
file2.tab:
apple - A;Z
Objective:
Return $1 of file1 if,
. $1 of file2 matches $3 of file1 and,
. any single element (separated by ";") in $3 of file2 is present in $2 of file1
In order to... (3 Replies)
Discussion started by: beca123456
3 Replies
3. Shell Programming and Scripting
In the tab delimited files below I am trying to match $2 in file1 to $2 of file2. If a match is found the awk checks $3 of file2 and if it is greater than 40% and $4 of file2 is greater than 49, the line in file1 is printed. In the desired output line3 of file1 is not printed because $3 off file2... (9 Replies)
Discussion started by: cmccabe
9 Replies
4. Shell Programming and Scripting
Hello everyone
I have a few hundreds of .mol2 files that has this pattern
@<TRIPOS>ATOM
2 H18 65.2220 Du 1 RES1 0.0000
@<TRIPOS>BOND
1 3 5 ar
@<TRIPOS>SUBSTRUCTURE
among them, some of the files are missing the line after the @<TRIPOS>BOND and they look... (2 Replies)
Discussion started by: Error404
2 Replies
5. Shell Programming and Scripting
Hello,
I have two files as follow:
AFFY_ID RS_ID CHROMOSOME POS_START POS_END ALLELE1 ALLELE2
SNP_A-1780283 rs17011450 chr4 127630275 127630276 C T
SNP_A-1780285 rs6919430 chr6 90919464 90919465 A C
SNP_A-1780286 --- chr7 104281409 104281410 A G
SNP_A-1780301 rs2342723 chr16 5748790... (1 Reply)
Discussion started by: Homa
1 Replies
6. Shell Programming and Scripting
Hello,
I have two files as following:
#bin chrom chromStart chromEnd name score strand observed
585 chr2 29442 29443 rs4637157 0 + C/T
585 chr2 33011 33012 rs13423995 0 + A/G
585 chr2 34502 34503 rs13386087 0 + ... (2 Replies)
Discussion started by: Homa
2 Replies
7. Shell Programming and Scripting
I have 2 files that I want to do some comparing on.
First, I want to find the unique list of devices in file1 and then put them to a new file, file2. I was able to do this without any problem with the following statement:
cat file1 | awk '{print $2}' | awk '!x++' > file2Here is what I can't... (2 Replies)
Discussion started by: jontjioe
2 Replies
8. Shell Programming and Scripting
I am trying to match 4 colums (first_name,last_name,dob,ssn) between 2 files and when there is an exact match I need to write out these matches to a new file with a combination of fields from file1 and file2. I've managed to come up with a way to match these 2 files based on the columns (see below)... (7 Replies)
Discussion started by: ambroze
7 Replies
9. Shell Programming and Scripting
In a directory, there are two different file extensions (*.txt and *.xyz) having similar names of numerical strings (*). The (*.txt) contains 5000 multiple files and the (*.xyz) also contains 5000 multiple files. Each of the files has around 4000 rows and 8 columns, with several unique string... (5 Replies)
Discussion started by: asanjuan
5 Replies
10. Shell Programming and Scripting
Hello!
I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
Discussion started by: Michelangelo
5 Replies