10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi
This is my first post and I'm just a beginner. So please be nice to me.
I have a couple of html files where a pattern beginning with "http://www.site.com" and ending with "/resource.dat" is present on every 241st line. How do I extract this to a new text file?
I have tried sed -n 241,241p... (13 Replies)
Discussion started by: dejavo
13 Replies
2. Shell Programming and Scripting
Input
data_10 SSA
data_2 TYUE
data_3 PEOCV
data_6 SSAT
data_21 SSA
data_19 TYUEC
data_14 TYUE
data_15 SSA
data_32 PEOCV
.
.
Desired Output
data_10 SSA
data_2 TYUE
data_3 PEOCV
data_6 SSAT
data_19 TYUEC (9 Replies)
Discussion started by: patrick87
9 Replies
3. Shell Programming and Scripting
Input:
21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11;
21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies
4. Shell Programming and Scripting
Input file 1:
>pattern_5
GAATTCGTTCATGTAGGTTGASDASFGDSGRTYRYGHDGSDFGSDGGDSGSDGSDFGSDF
ATTTAATTATGATTCATACGTCATATGTTATTATTCAATCGTATAAAATTATGTGACCTT
SDFSDGSDFKSDAFLKJASLFJASKLFSJAKJFHASJKFHASJKFHASJKFHSJAKFHAW
>pattern_1
AAGTCTTAAGATATCACCGTCGATTAGGTTTATACAGCTTTTGTGTTATTTAAATTTGAC... (10 Replies)
Discussion started by: patrick87
10 Replies
5. Shell Programming and Scripting
Input file:
>TRACK: Position: 1 TYPE: 1 Pos:
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK: Position: 1 TYPE: 2 Pos:
FAHASFQMALLKGLPLYMS... (8 Replies)
Discussion started by: patrick87
8 Replies
6. Shell Programming and Scripting
Input
Participant number: HAC
Position type Location Distance_start Distance_end Range Mark
1 1 + Front 808 1083 276
2 1 + Front 1373 1636 264
3 1 - Back 1837 2047 211
Participant number: BCD
Position type... (6 Replies)
Discussion started by: patrick87
6 Replies
7. Shell Programming and Scripting
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies
8. Shell Programming and Scripting
My input:
>seq_1
DSASSTRRARRRRTPRTPSLRSRRSDVTCS
>seq_3
RMRLRRWRKSCSERS*RRSN
>seq_8
RTTGLSERPRLPTTASRSISSRWTR
>seq_10
NELPLEKGSLDSISIE
>seq_9
PNQGDAREPQAHLPRRQGPRDRPLQAYA+
QVQHRRHDHSRTQH*LCRRRQREDCDRLHR
>seq_4
DRGKGQAGCRRPQEGEALVRRCS>seq_6
FA*GLAAQDGEA*SGRG
My output: Extract all... (22 Replies)
Discussion started by: patrick87
22 Replies
9. Shell Programming and Scripting
My input file:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG
My... (22 Replies)
Discussion started by: patrick87
22 Replies
10. Shell Programming and Scripting
Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Discussion started by: patrick87
2 Replies
git-annex-shell(1) General Commands Manual git-annex-shell(1)
NAME
git-annex-shell - Restricted login shell for git-annex only SSH access
SYNOPSIS
git-annex-shell [-c] command [params ...]
DESCRIPTION
git-annex-shell is a restricted shell, similar to git-shell, which can be used as a login shell for SSH accounts.
Since its syntax is identical to git-shell's, it can be used as a drop-in replacement anywhere git-shell is used. For example it can be
used as a user's restricted login shell.
COMMANDS
Any command not listed below is passed through to git-shell.
Note that the directory parameter should be an absolute path, otherwise it is assumed to be relative to the user's home directory. Also the
first "/~/" or "/~user/" is expanded to the specified home directory.
configlist directory
This outputs a subset of the git configuration, in the same form as git config --list
inannex directory [key ...]
This checks if all specified keys are present in the annex, and exits zero if so.
dropkey directory [key ...]
This drops the annexed data for the specified keys.
recvkey directory key
This runs rsync in server mode to receive the content of a key, and stores the content in the annex.
sendkey directory key
This runs rsync in server mode to transfer out the content of a key.
commit directory
This commits any staged changes to the git-annex branch. It also runs the annex-content hook.
OPTIONS
Most options are the same as in git-annex. The ones specific to git-annex-shell are:
--uuid=UUID
git-annex uses this to specify the UUID of the repository it was expecting git-annex-shell to access, as a sanity check.
HOOK
After content is received or dropped from the repository by git-annex-shell, it runs a hook, .git/hooks/annex-content (or hooks/annex-con-
tent on a bare repository). The hook is not currently passed any information about what changed.
ENVIRONMENT
GIT_ANNEX_SHELL_READONLY
If set, disallows any command that could modify the repository.
GIT_ANNEX_SHELL_LIMITED
If set, disallows running git-shell to handle unknown commands.
SEE ALSO
git-annex(1)
git-shell(1)
AUTHOR
Joey Hess <joey@kitenet.net>
<http://git-annex.branchable.com/>
git-annex-shell(1)
