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Hi vgersh99,

Your codes work like charm. Thanks a million. :)

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Hi RudiC,

Your codes work great on my real data too. Thanks a million :)

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Hi,

I need help to match patterns from between two different files and extract region of strings.

inputfile1.fa

>l-WR24-1:1
GCCGGCGTCGCGGTTGCTCGCGCTCTGGGCGCTGGCGGCTGTGGCTCTACCCGGCTCCGG...

Hi RudiC,

It works great..thanks so much. :)

Hi,


there is a slight change for the output that I need to generate. Let say I have below input data


SIN3A-2:2 StringTie transcript 15 2652 1000 + . gene_id...

Hi RudiC,


The multiple <TAB> chars were my typo mistakes. Sorry about that.

It worked now. Thanks a million. I am trying to understand your codes especially the "OUT" part. If you don't...

Hi,

I noticed that the code did not work for the below condition.


CL-AS1:4 OnePiece tra_law 4721 4962 1 . . g_id "R06794.16434"; tra_law_id "R06794.16434.1"; g_line "6.980716"; KM "4.794062";...

-> I do have 2 lines header in my real data that need to be omitted. :)

Hi RudyC,

Thanks so much...your codes work great on my real data.

If you notice, I created $20 to put in the total of $5 - $4. I need to remove $20 (last column) from being printed out in the...

Hi,

I am trying to extract data based on certain conditions. My sample input file as below:-


lnc-2:1 OnePiece tra_law 500 688 1 . . g_id "R792.8417"# tra_law_id "R792.8417.1"# g_line...

This is great! thanks so much :)

Thanks so much. It works perfectly!

I am looking into your codes. {split (substr ($0, RSTART, RLENGTH), T, "\""); if (T[2] <= 3) next} This is so good to know as I have many more data with this...

Hi,

I have been trying to extract rows that match pattern "cov" with the value next to it to be > 3. The 'cov' pattern may appear either in $3 or $4 (if using ";" as field separator). Below is the...

It worked like a charm!! Thanks a million. :)

Sorry, it still did not work on my actual data. It worked for "transcript_alias_#" but it created 2 whitespaces. I just need 1 whitespace. and It did not work for "gene_alias_#" at all. Also, it...

One of the codes that i did :-


sed -e 's/\.*id/& \ /' -e 's/\.*alias_./& \ /' inputfile


It worked in certain columns only.

--- Post updated at 02:33 PM ---





The difference is...

Hi,

Need help. This seems simple but I tried many things but failed to get what I wanted. Below is the input file:

...