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Search: Posts Made By: kylle345
1,464
Posted By kylle345
The Marker line does exist and the name does...
The Marker line does exist and the name does exist but it not always mmm or jjj. They vary each time. I just need them to be replaced with the names on the file.

Hope that makes sense.
1,464
Posted By kylle345
Sorry I am a bit rusty on coding. So everything...
Sorry I am a bit rusty on coding. So everything does work but the problem is that the names with .fsa do not get replaced by the name on the file. The AMEL row gets filled in but thats about it.
...
1,464
Posted By kylle345
The input file is .txt (the only common theme for...
The input file is .txt (the only common theme for each of the files). The output file cab be anything (even replacing it).
1,464
Posted By kylle345
Oddly enough I cannot seem to figure out what the...
Oddly enough I cannot seem to figure out what the issue is. Could it be the spacing (number of tabs)?
1,464
Posted By kylle345
Thank you for the code but the error "could not...
Thank you for the code but the error "could not be processed comes up"

---------- Post updated at 02:54 PM ---------- Previous update was at 02:54 PM ----------




thanks is there a way to...
1,464
Posted By kylle345
New code for modifying text files in a folder
Hi I want to create a code that can do this for all text files in a folder.

The filenames are all listed in the following syntax

UNIQUEID-LABID_[First Name 1][M] - [First Name 2][F].txt

Each...
1,387
Posted By kylle345
Hi thanks for the reply. No there is...
Hi thanks for the reply.

No there is always a family with a child and either one or both parents.

There is always a father and/or mother + child in our cases.

When there are two parents...
1,387
Posted By kylle345
A script to format a file (ideally PERL)
Hi forum members. It has been several years since my last post. Currently I am using fairly large datasets on a day to day basis for handling immigration cases at a law firm. Our Input file is...
1,305
Posted By kylle345
also what if I move the middle 1000 (lets say row 45-1045) to a new file
also what if I move the middle 1000 (lets say row 45-1045) to a new file

sorry a bit more complicated then before
1,305
Posted By kylle345
Moving or copying first rows and last rows into another file
Hi I would like to move the first 1000 rows of my file into an output file and then move the last 1000 rows into another output file.

Any help would be great

Thanks
3,224
Posted By kylle345
hi thanks for the code however I think my file is...
hi thanks for the code however I think my file is too big. I get this message:

shuf: memory exhausted


is there a way around it? my file is like 7 GB
3,224
Posted By kylle345
Randomize a file
Hi,

I have a large file that looks like this:

@FCC189PACXX:2:1101:1420:2139/1
AGCGAGACTCCGTCTCAAAAAGAAAAAATTTTTCAAAATATTGCAATGGGCTTGTAATTTCTGCTTAAATGTCAGGAGGTCTGAGCCATT
+...
2,162
Posted By kylle345
combining two images into one
Hi,
I have two sets of image files. Both sets have names A to Z but set 1 ends with .cdt.png and set 2 ends with .matrix.png. I want set 1 to match with set 2 if the names match (i.e. A.cdt.png will...
1,980
Posted By kylle345
No errors show up... it is just that I dont get...
No errors show up... it is just that I dont get an output
1,980
Posted By kylle345
it still does not give output files....
it still does not give output files. :mad::confused::confused::confused::confused::confused::confused:
1,980
Posted By kylle345
matching image files to create one image
Hi, I have two sets of image files. Both sets have names A to Z but set 1 ends with .cdt.png and set 2 ends with .matrix.png. I want set 1 to match with set 2 if the names match (i.e. A.cdt.png will...
10,231
Posted By kylle345
Hi I have been working on this for a few hours...
Hi I have been working on this for a few hours now and still can't get it to work. Like I would put the command in but no files get outputted.

any help here would be great

thanks
10,231
Posted By kylle345
Thanks for the reply but I made a mistake in my...
Thanks for the reply but I made a mistake in my explanation. I also need the initial names prior to the .cdt.png or .matrix.png to match. So if the name of the file is joe.cdt.png then I would want...
1,191
Posted By kylle345
renaming files
Hi,
I have a list of files in a folder with the same name ending (over 1000 files)

joe.jpy.jpeg
joe1.jpy.jpeg
joe2.jpy.jpeg
jon3.jpy.jpeg
jor5.jpy.jpeg
.....jpy.jpeg
etc.

I want to...
10,231
Posted By kylle345
thanks it turns out I have the command function. ...
thanks it turns out I have the command function. So how would i do it for all the files simultaneously or consecutively (i.e. all files that match with the initial name e.g. joe.matrix.png matched...
10,231
Posted By kylle345
putting two images together
Hi,

I generated many figures in .png format (approximately 120). Right now I need to pair the figures on a single page so that the files with the same file name (i.e. jack) that end with...
1,034
Posted By kylle345
Hi, thanks. That partly worked (1st step). The...
Hi, thanks. That partly worked (1st step). The first column becomes fused to the filename with that code.

Now I need to average the rows that have the same filename.

Thanks
1,034
Posted By kylle345
Hi thanks for replying. Yes that definitely...
Hi thanks for replying. Yes that definitely works and I am slowly getting to the final stage.

Here is the new code that I have. Yet again there are still problems but I think a minor tweek from...
1,034
Posted By kylle345
Creating a shortcut
Hi, I want to match a column of one file with many others and take the average of each one and put them into one file (I know sounds complicated).

so the 1st file is just a list of names that I...
4,489
Posted By kylle345
Pearson correlation between two files
Hi, I want a quick way to determine the pearson correlation between two files. The two files have the same format with only the 3rd column varying.

E.g. of file 1

chr1 0 62
chr1 1 260...
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