Visit Our UNIX and Linux User Community

Search Results

Search: Posts Made By: raj_k
492
Posted By raj_k
Comparing 2 column of a file with the lines in another file
Hi
I have 2 files which are tab delimited.
file1
chr1 5 10 P1 KR4
chr1 10 20 1H LA1 R0 TA1
file2
P1 G6 13.27 0.2425
P1 KR4 18.79 0.3060
P1 DND1 19.44 0.2833
N1 DH1 0.99 1.08
1H R0 0.9 NA...
610
Posted By raj_k
Hii Thank you very much. I have another problem...
Hii
Thank you very much. I have another problem what if only first 2 fields are identical are rest are not
for example:
I feel nothing as usual
I feel something unusual

still i want to get ...
610
Posted By raj_k
Join fields in a same file based on condition
I have an input file like this...
All iI want to do is If the lines are identical except for the last field i want to merge them into single line
input_file
I feel something is nothing
I feel...
1,819
Posted By raj_k
Hi, this is what i am calling as overlap F1:...
Hi, this is what i am calling as overlap

F1: |-----|
F2: |-----|

F1: |-----|
F2: |--|

F1: |-----|
F2: |-----|

F1: |-----|
F2: |---------|
1,819
Posted By raj_k
ya the overlap happens with neighbor lines only
ya the overlap happens with neighbor lines only
1,819
Posted By raj_k
we have to check for overlaps based on 2nd and...
we have to check for overlaps based on 2nd and 3rd column

in file1 first line 2nd and 3rd columns are 22 and 25. in file2 the first line contains 24 and 25. i,e., we have to check ...
4,679
Posted By raj_k
use piping head -2 abc >a |cp a 123
use piping
head -2 abc >a |cp a 123
1,819
Posted By raj_k
In file1 and we have to check for the overlpping...
In file1 and we have to check for the overlpping regions based on column 2 and 3. and if overlapps are found whole lines have to be printed. the lines of first file followed by the lines of second...
1,819
Posted By raj_k
Print the overlapping entries in 2 files to separate file
I have two files that contain overlapping positions. i want to put them together each overlapping entries in both files in to a new file (the entries of first file first and the entries of second...
1,242
Posted By raj_k
hi akshay If i use your code on this data set ...
hi akshay
If i use your code on this data set
chr11 87578121 87579121 chr11 87578115 87579115 ID1
chr11 87578193 87579193 chr11 87578115 ...
1,242
Posted By raj_k
hi its giving output something like this: ...
hi
its giving output something like this:

chr15 99874874 99875874 chr15 99875173 99876173 aa1
chr15 99874962 99875962 chr15 99875173 ...
1,242
Posted By raj_k
Remove duplicate entries based on the range
I have file like this:
chr start end
chr15 99874874 99875874 chr15 99875173 99876173 aa1
chr15 99874923 99875923 chr15 99875173 99876173 aa1...
1,831
Posted By raj_k
input Id1 chr9 fox12_exon_0_F chr9 56...
input
Id1 chr9 fox12_exon_0_F chr9 56 72 72660772 H3K4ME2_E 726 72 promoter intergenic_Nedd4_exon_0_Foutput
Id1 chr9 fox12 chr9 56 72 72660772 ...
1,831
Posted By raj_k
for entries like this filed1 field2...
for entries like this filed1 field2 gene_intron_24_R ...filed10 field11 gene_intron_24_ it is just replacing only those that occur after field2. it is not replacing after field11. I should have been...
1,831
Posted By raj_k
I have tried awk '{sub("_intron_\.[0-9]+\.[A-Z]",...
I have tried awk '{sub("_intron_\.[0-9]+\.[A-Z]", "")}1' file |awk '{sub("_exon_\.[0-9]+\.[A-Z]", "")}1'

but unfortunately for intergenic its not doing anythg
1,831
Posted By raj_k
Replace specific words with nothing
Hi
I have a file like that contains infomation about genes exons introns made as a single string. i am just planning to get the gene name alone with out any extra information. ...
866
Posted By raj_k
Hey sorry its a mistake i edited it
Hey sorry its a mistake i edited it
866
Posted By raj_k
Matching the rows in 2 files
I have a file like this

AFF3 BCL2
AGTRAP BRAF
AHRR NCOA2
AKAP9 BRAF
And second input file like this

chromosome start end gene
chr1 38177326 38664955 AFF3...
1,151
Posted By raj_k
Thank you for your suggestions i got it working
Thank you for your suggestions i got it working
1,151
Posted By raj_k
[Solved] Converting the data into matrix with 0's and 1's
I have a file that contains 2 columns tag,pos
cat input_file

tag pos
atg 10
ata 16
agt 15
agg 19
atg 17
agg 14
I have used following command to sort the file based on second column
sort...
1,413
Posted By raj_k
Thats exactly what i needed
Thats exactly what i needed
1,413
Posted By raj_k
sample output
I made it in .xls format so that the fields would be clearly seperated from each other. please see to it
1,413
Posted By raj_k
There are many isoforms so tissue field may not...
There are many isoforms so tissue field may not be identical even if they have same gene name. I want all (only if we consider gene names they appear to be duplicates but when we see other fields...
1,413
Posted By raj_k
I have attached the file and sent. It seems that...
I have attached the file and sent. It seems that requires moderators permission so soon i think it will be approved and you can see to it
1,413
Posted By raj_k
I need all the three fields separated by tab but...
I need all the three fields separated by tab but when i am applying for my huge data somehow it is mixing everything so i thought i would copy each column separately into new file
Showing results 1 to 25 of 28

 

Featured Tech Videos

All times are GMT -4. The time now is 11:35 AM.
Unix & Linux Forums Content Copyright 1993-2020. All Rights Reserved.
Privacy Policy