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Search: Posts Made By: kmkocot
2,884
Posted By kmkocot
print lines AFTER lines cointaining a regexp (or print every first and fourth line)
Hi all,

This should be very easy but I can't figure it out...

I have a file that looks like this:

@SRR057408.1 FW8Y5CK02R652T length=34
AGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT
+SRR057408.1...
2,155
Posted By kmkocot
Thank you!
Thank you!
2,155
Posted By kmkocot
cat certain files in directories to files named after the dir?
Hi all,

I have a directory with many subdirectories each named like so: KOG0001, KOG0002, ...KOG9999.

Each of these subdirectories contain a variable number two kinds of files (nuc and prot)...
2,846
Posted By kmkocot
Thanks for your help! That worked really well. ...
Thanks for your help! That worked really well.

The KOG*_final.fasta files look like the example below. There is a one-line header that always begins with a greater-than sign, has a 3-4 letter...
2,846
Posted By kmkocot
Deleting files that don't contain particular text strings / more than one instance of a string
Hi all,

I have a directory containing many subdirectories each named like KOG#### where # represents any digit 0-9. There are several files in each KOG#### folder but the one I care about is named...
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