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except for 1st column, yes, only 5th is different unless the whole line doesnt exist.. and im looking for KB0005-KB204320 diff

one more thing: how can i access the value in 5th column and compare it to the corresponding line, printing the difference, or, warning that this line exists only in one file

Hi,
I have tab separated list:
KB0005 1019 T IFVATVPVI 0.691 PKC YES
KB0005 1036 T YFLQTSQQL 0.785 PKC YES
KB0005 1037 S FLQTSQQLK ...

how can i write it in perl?

---------- Post updated at 03:07 PM ---------- Previous update was at 01:56 PM ----------

ok, found out :)

hi, i have a list of file:
KB0002 KB215027
KB0003 KB215027
KB0004 KB215027
KB0005 KB204320
KB0006 KB207074
KB0007 KB215204
KB0008 KB223809
KB0009 KB236640
KB0010 KB244506
KB0011 ...

Hi Im supposed to compare lines in a file :
KB0005 1019 T IFVATVPVI 0.691 PKC YES
KB0005 1036 T YFLQTSQQL 0.785 PKC YES
KB0005 1037 S FLQTSQQLK 0.585 DNAPK YES
...

The problem is that those files has different names, and also the first column differs for every row.. How to overcome that?

hi, quick question i have one file which join one file with reference one
Looks like this:
KB0000 KB207418
KB0001 KB244904
KB0002 KB215027
KB0003 KB215027
KB0004 KB215027
KB0005 KB204320...

ok my mistake, output should be like:
ENST00000262042 rs47 583 N D JPT T 1 C 0 T/T C/T C/C 1 0 0
ENST00000408005 rs48 583 N D YRI T 1 C 0 T/T C/T C/C 1 0 0

i have to go through both list and for each line if the rsid is the same eg rs47 i need to print output as shown above

Hi,
I have two list I wanna combine and print them together in the output depending if they have the same rsid:
file1:
ENST00000262042 rs47 583 N D
ENST00000408005 rs48 583 N D
ENST00000311322...