Programming

#!/bin/bash
for dir in Frog-mol-ryan_*; do
  if [ -d "${dir}" ]; then
    echo Loading structures in Pymol: $dir
    cat /dev/null > log.pml
    for file in $dir/*.pdbqt; do
      echo "load /server/John/Docking-Studies/Insilico-mod-FC996/docking-FC996-analog/MR1004/test/$file" >> log.pml
    done
    cat <<EOF>>log.pml
reset
load /server/John/Docking-Studies/Insilico-mod-FC996/docking-FC996-analog/PDBs/Holo-with-Bpore.pdb
cmd.hide("everything","holo-with-Bpore")
cmd.show("cartoon"   ,"holo-with-Bpore")
EOF
    for file in $dir/*.pdbqt; do
      echo "cmd.show(\"sticks\", \"`basename $file`\")" >> log.pml
    done
    /usr/bin/pymol log.pml
  fi
done