10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
hey!!! I have 2 files file1 is as ids.txt and is
file2 is sequences.fasta and is like
>gi|546473233|gb|AWWX01630175.1|... (9 Replies)
Discussion started by: harpreetmanku04
2. Shell Programming and Scripting
Please would anybody help find the missing sequences in the filename of the files?
I have for example these files:
OOOCCCCLOGS400001.txt... (13 Replies)
Discussion started by: arrals_vl
3. Shell Programming and Scripting
Escape sequences \n, \t, \b, \t, \033(1m are not working.
I just practiced these escape sequences. It worked first. Later its not working.
Also the command - echo inside the script editor shows as shaded by a color. Before that echo inside the script editor wont show like this.... (4 Replies)
Discussion started by: GaneshAnanth
4. Shell Programming and Scripting
How to remove the repeated 'Chr's in different sequences. In the given example, Chr19 is repeated in two samples
with the same number i.e. +52245923. How to remove one of the entry in any of the samples and to give the range for each
Chr which is -20 for minimum range value and +120 for... (1 Reply)
Discussion started by: hravisankar
5. Shell Programming and Scripting
I would like to add the following references at the very beggining of all my files:
Thus, the resulting file should look like this:
Any help will be very much appreciated (6 Replies)
Discussion started by: Xterra
6. Shell Programming and Scripting
My file looks like this:
But I would like to 'trim' all sequences to the same lenght 32 characters, keeping intact all the identifier (>GHXCZCC01AJ8CJ)
Would it be possible to use awk to perform this task? (2 Replies)
Discussion started by: Xterra
7. UNIX for Advanced & Expert Users
I have come across the necessity for me to deal with binary sequences and I had a few questions.
1- Does any UNIX scripting language provide any tool or command for converting text data to binary sequences? Example of binary sequence: "0x97 0x93 0x85 0x40 0xd5 0xd6 0xd7"
2- If I want... (2 Replies)
Discussion started by: Indalecio
8. Shell Programming and Scripting
I am running mac osx, I am trying to use the terminal to copy groups of files
I have and images sequence that is say 5000 frames long.
What I want to do is copy sections of this files sequence to individual shot folder.
eg copy say BG_0654 to BG_0765 to shot one folder, and say... (1 Reply)
Discussion started by: jonson
Can any one help me to find available escape sequences in UNIX shell programming? ( Like \n, \c etc,. in C or C++)
Iam generating one report using one of the script, in that it is very much essential.
LOVE (6 Replies)
Discussion started by: Love
10. Shell Programming and Scripting
for file in `seq 1 256`; do printf "\x$file -- $file" ; done ; printf "\n"
produces the wrong output.
I want to show the ascii codes but need to output
a hexidecimal number sequence.
I know I should use awk to do this but i'm not sure how cause I forget.
what is the awk equivelant of seq... (5 Replies)
Discussion started by: JoeTheGuy