10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
hey!!! I have 2 files file1 is as ids.txt and is
>gi|546473186|gb|AWWX01630222.1|
>gi|546473233|gb|AWWX01630175.1|
>gi|546473323|gb|AWWX01630097.1|
>gi|546474044|gb|AWWX01629456.1|
>gi|546474165|gb|AWWX01629352.1|
file2 is sequences.fasta and is like
>gi|546473233|gb|AWWX01630175.1|... (9 Replies)
Discussion started by: harpreetmanku04
9 Replies
2. Shell Programming and Scripting
Hi,
Please would anybody help find the missing sequences in the filename of the files?
I have for example these files:
OOOAAAALOGS400001.txt
OOOAAAALOGS400002.txt
OOOAAAALOGS400003.txt
OOOBBBBLOGS40001.txt
OOOBBBBLOGS400002.txt
OOOBBBBLOGS400003.txt
OOOCCCCLOGS400001.txt... (13 Replies)
Discussion started by: arrals_vl
13 Replies
3. Shell Programming and Scripting
Hi Gurus,
Escape sequences \n, \t, \b, \t, \033(1m are not working.
I just practiced these escape sequences. It worked first. Later its not working.
Also the command - echo inside the script editor shows as shaded by a color. Before that echo inside the script editor wont show like this.... (4 Replies)
Discussion started by: GaneshAnanth
4 Replies
4. Shell Programming and Scripting
Hai,
How to remove the repeated 'Chr's in different sequences. In the given example, Chr19 is repeated in two samples
with the same number i.e. +52245923. How to remove one of the entry in any of the samples and to give the range for each
Chr which is -20 for minimum range value and +120 for... (1 Reply)
Discussion started by: hravisankar
1 Replies
5. Shell Programming and Scripting
I would like to add the following references at the very beggining of all my files:
Thus, the resulting file should look like this:
Any help will be very much appreciated (6 Replies)
Discussion started by: Xterra
6 Replies
6. Shell Programming and Scripting
My file looks like this:
But I would like to 'trim' all sequences to the same lenght 32 characters, keeping intact all the identifier (>GHXCZCC01AJ8CJ)
Would it be possible to use awk to perform this task? (2 Replies)
Discussion started by: Xterra
2 Replies
7. UNIX for Advanced & Expert Users
Hello,
I have come across the necessity for me to deal with binary sequences and I had a few questions.
1- Does any UNIX scripting language provide any tool or command for converting text data to binary sequences? Example of binary sequence: "0x97 0x93 0x85 0x40 0xd5 0xd6 0xd7"
2- If I want... (2 Replies)
Discussion started by: Indalecio
2 Replies
8. Shell Programming and Scripting
Hi
I am running mac osx, I am trying to use the terminal to copy groups of files
I have and images sequence that is say 5000 frames long.
What I want to do is copy sections of this files sequence to individual shot folder.
eg copy say BG_0654 to BG_0765 to shot one folder, and say... (1 Reply)
Discussion started by: jonson
1 Replies
9. Solaris
:) Hi,
Can any one help me to find available escape sequences in UNIX shell programming? ( Like \n, \c etc,. in C or C++)
Iam generating one report using one of the script, in that it is very much essential.
Regards,
LOVE (6 Replies)
Discussion started by: Love
6 Replies
10. Shell Programming and Scripting
for file in `seq 1 256`; do printf "\x$file -- $file" ; done ; printf "\n"
produces the wrong output.
I want to show the ascii codes but need to output
a hexidecimal number sequence.
I know I should use awk to do this but i'm not sure how cause I forget.
what is the awk equivelant of seq... (5 Replies)
Discussion started by: JoeTheGuy
5 Replies