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Try creating two files with the required time stamps using the touch command and then retry the find using -newer
e.g.
touch -t 201001010001 t20100101
touch -t 201001060001 t20100106
find -type f...

You could try symbolically linking the .c file to the .syn file rather than copying it, so as soon as the .syn is updated, the .c tracks it, or you could write the rules in your Makefile to deal with...

The $$ in the gcc line, I believe, will be different from the one in the sed line, so your sed will be operating on a different file from the one generated by the gcc. Try storing $$ into another...

Perl has a built in 'stat' command. Is this available to you?

Maybe I've missed the point here, but if you want to import your crontab into Excel, why not just do it with the raw file using white space as the delimiter?
Each crontab line has 6 entries -...

Similar to edgarvm's but coping with new files as well as different ones...

new=/dist
old=/dist_old
diff=/dist_upgrade

cd $new
for f in *f
do
# Diff the files - ignore the output...
...