SWISS::GN(3pm) User Contributed Perl Documentation SWISS::GN(3pm)
Name
SWISS::GN.pm
Description
SWISS::GN represents one gene name from the GN line. The container object for several synonym gene names is SWISS::GeneGroup.
Inherits from
SWISS::BaseClass.pm
Attributes
"text"
One gene name.
Methods
Standard methods
new
fromText
toText
Reading/Writing methods
toMixedCase(@regexps)
Convert gene names to mixed case, according to one or more regular expressions. This is typically useful for converting uppercase ORF
numbers to mixed case. E.g. the E.coli gene "B1563" converted with the regexp '(b(d{4}(.d)?))' will yield the gene name "b1563".
The method also supports fused gene names, e.g. "B0690/B0691" is converted to "b0690/b0691". The method changes the text of the
SWISS::GN object and also returns the new text value.
perl v5.10.1 2006-01-26 SWISS::GN(3pm)
