Query: swiss::ccs
OS: debian
Section: 3pm
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
SWISS::CCs(3pm) User Contributed Perl Documentation SWISS::CCs(3pm) Name SWISS::CCs Description SWISS::CCs represents the CC lines within a Swiss-Prot or TrEMBL entry as specified in the user manual http://www.expasy.org/sprot/userman.html . The CCs object is a container object which holds a list comprised of object of the type SWISS::CC or derived classes (see below). Code example local $/=" // "; while (<>) { my $entry = SWISS::Entry-> fromText($_); my @CCs = $entry -> CCs -> elements(); for my $CC (@CCs) { if ($CC -> topic eq 'ALTERNATIVE PRODUCTS') { # now can call methods of CCalt_prod } elsif ($CC -> topic eq 'Copyright') { # now can call methods of CCcopyright } else { # now can call methods of CC } } } Inherits from SWISS::ListBase.pm Attributes "list" Each list element is an object of one of the following classes, depending of the type of comment: topic object -------------------- -------------------- ALTERNATIVE PRODUCTS SWISS::CCalt_prod RNA EDITING SWISS::CCrna_editing BIOPHYSICOCHEMICAL PROPERTIES SWISS::CCbpc_properties INTERACTION SWISS::CCinteraction Copyright SWISS::CCcopyright (all other topics) SWISS::CC Methods Standard methods new fromText sort Sort the CC block according to the order given in Swiss-Prot annotation note ANN017. toText update Reading/Writing methods ccTopic ($topic) Returns true if entry contains a comment block with the specified topic. copyright Returns a string representation of the copyright text. del (@patternList) Deletes all comment elements whose topic matches the first element of the pattern list. The second element is the used to specify a requirement for the comment to match as well. get (@patternList) An array is returned consisting of all comment elements elements whose topic matches any elements of the pattern list. getObject (@patternList) Same as get, but returns the results wrapped in a new ListBase object. toString Returns a string representation of the CCs object. perl v5.10.1 2008-07-16 SWISS::CCs(3pm)
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