debian man page for go::parsers::go_ont_parser

GO::Parsers::go_ont_parser(3pm) 			User Contributed Perl Documentation			   GO::Parsers::go_ont_parser(3pm)

NAME
	 GO::Parsers::go_ont_parser	- syntax parsing of GO .ontology flat files

SYNOPSIS
	 do not use this class directly; use GO::Parser

DESCRIPTION
       This generates Stag event streams from one of the various GO flat file formats (ontology, defs, xref, associations). See GO::Parser for
       details

       Examples of these files can be found at http://www.geneontology.org

       A description of the event streams generated follows; Stag or an XML handler can be used to catch these events

GO ONTOLOGY FILES
       These files have the .ontology suffix. The stag-schema for the event streams generated look like this:

	 (ontology
	  (source
	    (source_type "s")
	    (source_path "s")
	    (source_mtime "i"))
	  (term+
	    (id "s")
	    (name "s")
	    (is_root? "i")
	    (relationship+
	      (type "s")
	      (to "s"))
	    (dbxref*
	      (dbname "s")
	      (acc "s"))
	    (synonym* "s")
	    (secondaryid* "s")
	    (is_obsolete? "i")))

AUTHOR
perl v5.14.2							    2010-05-12					   GO::Parsers::go_ont_parser(3pm)