debian man page for bio::treeio::treeeventbuilder

Query: bio::treeio::treeeventbuilder

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::TreeIO::TreeEventBuilder(3pm)			User Contributed Perl Documentation			Bio::TreeIO::TreeEventBuilder(3pm)

NAME
Bio::TreeIO::TreeEventBuilder - Build Bio::Tree::Tree's and Bio::Tree::Node's from Events
SYNOPSIS
# internal use only
DESCRIPTION
This object will take events and build a Bio::Tree::TreeI compliant object makde up of Bio::Tree::NodeI objects.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::TreeIO::TreeEventBuilder->new(); Function: Builds a new Bio::TreeIO::TreeEventBuilder object Returns : Bio::TreeIO::TreeEventBuilder Args : treetype Title : treetype Usage : $obj->treetype($newval) Function: Returns : value of treetype Args : newvalue (optional) nodetype Title : nodetype Usage : $obj->nodetype($newval) Function: Returns : value of nodetype Args : newvalue (optional) SAX methods start_document Title : start_document Usage : $handler->start_document Function: Begins a Tree event cycle Returns : none Args : none end_document Title : end_document Usage : my @trees = $parser->end_document Function: Finishes a Phylogeny cycle Returns : An array Bio::Tree::TreeI Args : none start_element Title : start_element Usage : Function: Example : Returns : Args : $data => hashref with key 'Name' end_element Title : end_element Usage : Function: Returns : none Args : $data => hashref with key 'Name' in_element Title : in_element Usage : Function: Example : Returns : Args : within_element Title : within_element Usage : Function: Example : Returns : Args : characters Title : characters Usage : $handler->characters($text); Function: Processes characters Returns : none Args : text string perl v5.14.2 2012-03-02 Bio::TreeIO::TreeEventBuilder(3pm)
Related Man Pages
bio::searchio::hmmer3(3pm) - debian
bio::tools::eutilities::link::urllink(3pm) - debian
bio::treeio::cluster(3pm) - debian
bio::treeio::nexus(3pm) - debian
bio::treeio::tabtree(3pm) - debian
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