debian man page for bio::tools::run::blastplus

Bio::Tools::Run::BlastPlus(3pm) 			User Contributed Perl Documentation			   Bio::Tools::Run::BlastPlus(3pm)

NAME
       Bio::Tools::Run::BlastPlus - A wrapper for NCBI's blast+ suite

SYNOPSIS
       Give standard usage here

DESCRIPTION
       Blast+ is NCBI's successor to the "blastall" family of programs.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
       http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Mark A. Jensen
       Email maj -at- fortinbras -dot- us

       Describe contact details here

CONTRIBUTORS
       Additional contributors names and emails here

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = new Bio::Tools::Run::BlastPlus();
	Function: Builds a new Bio::Tools::Run::BlastPlus object
	Returns : an instance of Bio::Tools::Run::BlastPlus
	Args	:

   program_version()
	Title	: program_version
	Usage	: $version = $bedtools_fac->program_version()
	Function: Returns the program version (if available)
	Returns : string representing location and version of the program
	Note	: this works around the WrapperBase::version() method conflicting with
		  the -version parameter for SABlast (good argument for not having
		  getter/setters for these)

   package_version()
	Title	: package_version
	Usage	: $version = $bedtools_fac->version()
	Function: Returns the BLAST+ package version (if available)
	Returns : string representing BLAST+ package version (may differ from version())

perl v5.12.3							    2011-06-18					   Bio::Tools::Run::BlastPlus(3pm)