debian man page for bio::tools::repeatmasker

Bio::Tools::RepeatMasker(3pm)				User Contributed Perl Documentation			     Bio::Tools::RepeatMasker(3pm)

NAME
       Bio::Tools::RepeatMasker - a parser for RepeatMasker output

SYNOPSIS
	   use Bio::Tools::RepeatMasker;
	   my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out');
	   while( my $result = $parser->next_result ) {
	     # get some value
	   }

DESCRIPTION
       A parser for RepeatMasker output

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Shawn Hoon
       Email shawnh@fugu-sg.org

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tools::RepeatMasker->new();
	Function: Builds a new Bio::Tools::RepeatMasker object
	Returns : Bio::Tools::RepeatMasker
	Args	: -fh/-file => $val, for initing input, see Bio::Root::IO

   next_result
	Title	: next_result
	Usage	: my $r = $rpt_masker->next_result
	Function: Get the next result set from parser data
	Returns : Bio::SeqFeature::FeaturePair
		  Feature1 is the Query coordinates and Feature2 is the Hit
	Args	: none

perl v5.14.2							    2012-03-02					     Bio::Tools::RepeatMasker(3pm)