debian man page for bio::searchio::writer::bsmlresultwriter

Bio::SearchIO::Writer::BSMLResultWriter(3pm)		User Contributed Perl Documentation	      Bio::SearchIO::Writer::BSMLResultWriter(3pm)

NAME
       Bio::SearchIO::Writer::BSMLResultWriter - BSML output writer

SYNOPSIS
	 use Bio::SearchIO;
	 my $in = Bio::SearchIO->new(-file   => 'result.blast',
				    -format => 'blast');
	 my $out = Bio::SearchIO->new(-output_format  => 'BSMLResultWriter',
				     -file	     => ">result.bsml");
	 while( my $r = $in->next_result ) {
	   $out->write_result($r);
	 }

DESCRIPTION
       This is a writer to produce BSML for a search result.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich
       Email jason-at-bioperl-dot-org

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::SearchIO::Writer::BSMLResultWriter->new();
	Function: Builds a new Bio::SearchIO::Writer::BSMLResultWriter object
	Returns : an instance of Bio::SearchIO::Writer::BSMLResultWriter
	Args	:

   to_string
	Purpose   : Produces data for each Search::Result::ResultI in a string.
		  : This is an abstract method. For some useful implementations,
		  : see ResultTableWriter.pm, HitTableWriter.pm,
		  : and HSPTableWriter.pm.
	Usage	  : print $writer->to_string( $result_obj, @args );
	Argument  : $result_obj = A Bio::Search::Result::ResultI object
		  : @args = any additional arguments used by your implementation.
	Returns   : String containing data for each search Result or any of its
		  : sub-objects (Hits and HSPs).
	Throws	  : n/a

perl v5.14.2							    2012-03-02			      Bio::SearchIO::Writer::BSMLResultWriter(3pm)