debian man page for bio::search::hsp::hmmer3hsp

Bio::Search::HSP::hmmer3HSP(3pm)			User Contributed Perl Documentation			  Bio::Search::HSP::hmmer3HSP(3pm)

NAME
       Bio::Search::HSP::hmmer3HSP - DESCRIPTION of Object

SYNOPSIS
       Give standard usage here

DESCRIPTION
       Describe the object here

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Thomas Sharpton
       Email thomas.sharpton@gmail.com

       Describe contact details here

CONTRIBUTORS
       Additional contributors names and emails here

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = new Bio::Search::HSP::hmmer3HSP();
	Function: Builds a new Bio::Search::HSP::hmmer3HSP object
	Returns : an instance of Bio::Search::HSP::hmmer3HSP
	Args	:

   get_aln
	Title	: get_aln
	Usage	: my $aln = $hsp->gel_aln
	Function: Returns a Bio::SimpleAlign representing the HSP alignment
	Returns : Bio::SimpleAlign
	Args	: none

perl v5.14.2							    2012-03-02					  Bio::Search::HSP::hmmer3HSP(3pm)