debian man page for bio::popgen::individuali

Bio::PopGen::IndividualI(3pm)				User Contributed Perl Documentation			     Bio::PopGen::IndividualI(3pm)

NAME
       Bio::PopGen::IndividualI - An individual who has Genotype or Sequence Results

SYNOPSIS
	 # Get a Bio::PopGen::IndividualI somehow
	 # test if it has alleles/genotypes for a given marker
	 if( $ind->has_marker($markername) ) {
	 }
	 # get the unique id
	 print $ind->unique_id, "
";

	 # get the number of results (genotypes)
	 print $ind->num_results;

DESCRIPTION
       Describe the interface here

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via
       email or the web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich
       Email jason-at-bioperl.org

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   unique_id
	Title	: unique_id
	Usage	: my $id = $individual->unique_id
	Function: Unique Identifier
	Returns : string representing unique identifier
	Args	: string

   num_genotypes
	Title	: num_genotypes
	Usage	: my $count = $person->num_results;
	Function: returns the count of the number of Results for a person
	Returns : integer
	Args	: none

   annotation
	Title	: annotation
	Usage	: my $annotation_collection = $ind->annotation;
	Function: Get/set a Bio::AnnotationCollectionI for this individual
	Returns : Bio::AnnotationCollectionI object
	Args	: [optional set] Bio::AnnotationCollectionI object

   get_Genotypes
	Title	: get_Genotypes
	Usage	: my @genotypes = $ind->get_Genotypes(-marker => $markername);
	Function: Get the genotypes for an individual, based on a criteria
	Returns : Array of genotypes
	Args	: either none (return all genotypes) or
		  -marker => name of marker to return (exact match, case matters)

   has_Marker
	Title	: has_Marker
	Usage	: if( $ind->has_Marker($name) ) {}
	Function: Boolean test to see if an Individual has a genotype
		  for a specific marker
	Returns : Boolean (true or false)
	Args	: String representing a marker name

   get_marker_names
	Title	: get_marker_names
	Usage	: my @names = $individual->get_marker_names;
	Function: Returns the list of known marker names
	Returns : List of strings
	Args	: none

perl v5.14.2							    2012-03-02					     Bio::PopGen::IndividualI(3pm)