debian man page for bio::mapio::mapmaker

Bio::MapIO::mapmaker(3pm)				User Contributed Perl Documentation				 Bio::MapIO::mapmaker(3pm)

NAME
       Bio::MapIO::mapmaker - A Mapmaker Map reader

SYNOPSIS
       # do not use this object directly it is accessed through the Bio::MapIO system

	   use Bio::MapIO;
	   my $mapio = Bio::MapIO->new(-format => "mapmaker",
						     -file   => "mapfile.map");
	   while ( my $map = $mapio->next_map ) {  # get each map
		   foreach my $marker ( $map->each_element ) {
		      # loop through the markers associated with the map
		   }
	   }

DESCRIPTION
       This object contains code for parsing and processing Mapmaker output and creating Bio::Map::MapI objects from it.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich
       Email jason@bioperl.org

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   next_map
	Title	: next_map
	Usage	: my $map = $factory->next_map;
	Function: Get one or more map objects from the Mapmaker input
	Returns : Bio::Map::MapI
	Args	: none

       See Bio::Map::MapI

   write_map
	Title	: write_map
	Usage	: $factory->write_map($map);
	Function: Write a map out through the factory
	Returns : none
	Args	: Bio::Map::MapI

perl v5.14.2							    2012-03-02						 Bio::MapIO::mapmaker(3pm)