debian man page for bio::mage::tools::mgedontologyclassentry

MAGE::Tools::MGEDOntologyClassEntry(3pm)		User Contributed Perl Documentation		  MAGE::Tools::MGEDOntologyClassEntry(3pm)

Bio::MAGE::Tools::MGEDOntologyClassEntry
   SYNOPSIS
	 use Bio::MAGE::Tools::MGEDOntologyClassEntry;
	 use Bio::MAGE::Tools::MGEDOntologyHelper;
	 use Bio::MAGE::QuantitationType::MeasuredSignal;

	 my $mo_helper = Bio::MAGE::Tools::MGEDOntologyHelper->new(
			       sourceFile => 'MGEDOntology.owl',
			 );

	 my $qt = Bio::MAGE::QuantitationType::MeasuredSignal->new(
		    identifier => 'QT1',
		    isBackground => 'false',
		  );

	 my $ont_entry = Bio::MAGE::Tools::MGEDOntologyClassEntry->new(
			   parentObject => $qt,
			   className => 'QuantitationType',
			   association => 'DataType',
			   values => {
				   DataType => 'float',
				   },
			   ontology => $mo_helper,
			 );

   DESCRIPTION
       This provides functionaliy for an ontology-aware OntologyEntry class for entries of type Class.

       Bio::MAGE::Tools::MGEDOntologyClassEntry is a concrete class.

       Superclass is: Bio::MAGE::Tools::MGEDOntologyEntry

       Subclasses are: none

   ATTRIBUTES
       Attributes are simple data types that belong to a single instance of a class. In the Perl implementation of the MAGE-OM classes, the
       interface to attributes is implemented using separate setter and getter methods for each attribute.

       mgedOntologyClass
	   Stores the name of the equivalent class or property in the MGED Ontology for this OntologyEntry

       isInstantiable
	   Stores true if the class is an instantiable one.

       isInstantiable
	   Contains a hash reference to a list of OM clases that are circular references which should only be followed one level.

BUGS
       Please send bug reports to the project mailing list: (mged-mage 'at' lists 'dot' sf 'dot' net)

AUTHOR
       Eric W. Deutsch (edeutsch 'at' systemsbiology 'dot' org) followup work by Jason E. Stewart (jasons 'at' cpan 'dot' org)

SEE ALSO
       perl(1).

POD ERRORS
       Hey! The above document had some coding errors, which are explained below:

       Around line 655:
	   You forgot a '=back' before '=head1'

perl v5.10.1							    2006-08-23				  MAGE::Tools::MGEDOntologyClassEntry(3pm)