debian man page for bio::location::widestcoordpolicy

Query: bio::location::widestcoordpolicy

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::Location::WidestCoordPolicy(3pm)			User Contributed Perl Documentation		     Bio::Location::WidestCoordPolicy(3pm)

NAME
Bio::Location::WidestCoordPolicy - class implementing Bio::Location::CoordinatePolicy as the widest possible and reasonable range
SYNOPSIS
See Bio::Location::CoordinatePolicyI
DESCRIPTION
CoordinatePolicyI implementing objects are used by Bio::LocationI implementing objects to determine integer-valued coordinates when asked for it. This class will compute the coordinates such that always the widest possible range is returned, but by using some common sense. This means that e.g. locations like "<5..100" (start before position 5) will return 5 as start (returned values have to be positive integers).
FEEDBACK
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Hilmar Lapp, Jason Stajich Email <hlapp-at-gmx-dot-net>, <jason-at-bioperl-dot-org>
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ start Title : start Usage : $start = $policy->start($location); Function: Get the integer-valued start coordinate of the given location as computed by this computation policy. Returns : A positive integer number. Args : A Bio::LocationI implementing object. end Title : end Usage : $end = $policy->end($location); Function: Get the integer-valued end coordinate of the given location as computed by this computation policy. Returns : A positive integer number. Args : A Bio::LocationI implementing object. perl v5.14.2 2012-03-02 Bio::Location::WidestCoordPolicy(3pm)
Related Man Pages
bio::align::statisticsi(3pm) - debian
bio::factory::locationfactoryi(3pm) - debian
bio::location::avwithincoordpolicy(3pm) - debian
bio::location::narrowestcoordpolicy(3pm) - debian
bio::tools::repeatmasker(3pm) - debian
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