debian man page for bio::factory::locationfactoryi

Query: bio::factory::locationfactoryi

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::Factory::LocationFactoryI(3pm)			User Contributed Perl Documentation		       Bio::Factory::LocationFactoryI(3pm)

NAME
Bio::Factory::LocationFactoryI - A factory interface for generating locations from a string
SYNOPSIS
# Do not use directly, see Bio::Factory::LocationFactory for example use Bio::Factory::FTLocationFactory; my $locfact = Bio::Factory::FTLocationFactory->new(); my $location = $locfact->from_string("1..200"); print $location->start(), " ", $location->end(), " ", $location->strand," ";
DESCRIPTION
An interface for Location Factories which generate Bio::LocationI objects from a string.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Hilmar Lapp Email hlapp at gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ from_string Title : from_string Usage : $loc = $locfactory->from_string("100..200"); Function: Parses the given string and returns a Bio::LocationI implementing object representing the location encoded by the string. Different implementations may support different encodings. An example of a commonly used encoding is the Genbank feature table encoding of locations. Example : Returns : A Bio::LocationI implementing object. Args : A string. perl v5.14.2 2012-03-02 Bio::Factory::LocationFactoryI(3pm)
Related Man Pages
bio::factory::ftlocationfactory(3pm) - debian
bio::factory::sequencestreami(3pm) - debian
bio::location::avwithincoordpolicy(3pm) - debian
bio::location::coordinatepolicyi(3pm) - debian
bio::ontology::relationshipfactory(3pm) - debian
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Substitute string using location (preferably perl).
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