debian man page for beagle_cpu_beaglecpu4stateimpl

beagle::cpu::BeagleCPU4StateImpl(3)				     HMSBEAGLE				       beagle::cpu::BeagleCPU4StateImpl(3)

NAME
       beagle::cpu::BeagleCPU4StateImpl -

SYNOPSIS
       Inherits beagle::cpu::BeagleCPUImpl< BEAGLE_CPU_GENERIC >.

   Public Member Functions
       virtual const char * getName ()
       virtual void calcStatesStates (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE
	   *matrices2)
       virtual void calcStatesPartials (REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE
	   *matrices2)
       virtual void calcPartialsPartials (REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const
	   REALTYPE *matrices2)
       virtual int calcRootLogLikelihoods (const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int
	   scalingFactorsIndex, double *outSumLogLikelihood)
       virtual int calcRootLogLikelihoodsMulti (const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices,
	   const int *scaleBufferIndices, int count, double *outSumLogLikelihood)
       virtual int calcEdgeLogLikelihoods (const int parentBufferIndex, const int childBufferIndex, const int probabilityIndex, const int
	   categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood)
       virtual void calcStatesStatesFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int
	   *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors)
       virtual void calcStatesPartialsFixedScaling (REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE
	   *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors)
       virtual void calcPartialsPartialsFixedScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const
	   REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors)
       virtual void calcPartialsPartialsAutoScaling (REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const
	   REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling)
       int integrateOutStatesAndScale (const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double
	   *outSumLogLikelihood)
       virtual void rescalePartials (REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes)

   Additional Inherited Members
Author
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Version 1.0.0							  Fri May 25 2012			       beagle::cpu::BeagleCPU4StateImpl(3)