debian man page for bp_split_seq

BP_SPLIT_SEQ(1p)					User Contributed Perl Documentation					  BP_SPLIT_SEQ(1p)

NAME
       split_seq - splits a sequence into equal sized chunks with an optional
		   overlapping range

SYNOPSIS
       split_seq -c 10000 [-o 1000] [-i] -f seq.in

DESCRIPTION
       The script will split sequences into chunks

       Mandatory Options:

	 -c  Desired length of the resulting sequences.
	 -f  Input file (must be FASTA format).

       Special Options:

	 -o  Overlapping range between the resulting sequences.
	 -i  Create an index file with the resulting sequence files. This is
	     useful if you want to pass this list as input arguments into
	     another programs (i.e. CLUSTAL, HMMER, etc.).

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHORS
	 Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
	 Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
	 (some enhancements)

perl v5.14.2							    2012-03-02							  BP_SPLIT_SEQ(1p)