debian man page for bp_search2bsml

BP_SEARCH2BSML(1p)					User Contributed Perl Documentation					BP_SEARCH2BSML(1p)

NAME
       search2bsml - Turn SearchIO parseable reports(s) into a BSML report

SYNOPSIS
       Usage:
	 search2bsml [-o outputfile] [-f reportformat] [-i inputfilename]  OR file1 file2 ..

DESCRIPTION
       This script will turn a protein Search report (BLASTP, FASTP, SSEARCH, AXT, WABA, SIM4) into a BSML File.

       The options are:

	  -i infilename        - (optional) inputfilename, will read
				 either ARGV files or from STDIN
	  -o filename	       - the output filename [default STDOUT]
	  -f format	       - search result format (blast, fasta,waba,axt)
				 (ssearch is fasta format). default is blast.
	  -h		       - this help menu

       Additionally specify the filenames you want to process on the command-line.  If no files are specified then STDIN input is assumed.  You
       specify this by doing: search2gff < file1 file2 file3

AUTHOR
       Jason Stajich, jason-at-bioperl-dot-org

perl v5.14.2							    2012-03-02							BP_SEARCH2BSML(1p)