debian man page for bp_process_sgd

BP_PROCESS_SGD(1p)					User Contributed Perl Documentation					BP_PROCESS_SGD(1p)

NAME
       process_sgd.pl - Massage SGD annotation flat files into a version suitable for the Generic Genome Browser

SYNOPSIS
	 % process_sgd.pl chromosomal_features.tab > yeast.gff

DESCRIPTION
       This script massages the SGD sequence annotation flat files located at
       ftp://genome-ftp.stanford.edu/pub/yeast/data_dump/feature/chromosomal_features.tab into a version of the GFF format suitable for display by
       the generic genome browser.

       To use this script, get the SGD chromosomal_features.tab file from the FTP site listed above, and run the following command:

	 % process_sgd.pl chromosomal_features.tab > yeast.gff

       The yeast.gff file can then be loaded into a Bio::DB::GFF database using the following command:

	 % bulk_load_gff.pl -d <databasename> yeast.gff

SEE ALSO
       Bio::DB::GFF, bulk_load_gff.pl, load_gff.pl

AUTHOR
       Lincoln Stein, lstein@cshl.org

       Copyright (c) 2002 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-03-02							BP_PROCESS_SGD(1p)