debian man page for bp_nrdb

Query: bp_nrdb

OS: debian

Section: 1p

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

BP_NRDB(1p)						User Contributed Perl Documentation					       BP_NRDB(1p)

NAME
bp_nrdb.PLS - a script to emulate Warren Gish's nrdb, make a unique sequence database from a set of input databases
SYNOPSIS
Usage: bp_nrdb.PLS [options] file1 file2 file3 Alternative usage bp_nrdb.PLS -p [options] file1 id1 file2 id2 file3 id3
DESCRIPTION
This script will create a unique database of sequences (quasi-nonredundant). The options are: -o filename - the filename the db is written (STDOUT by default) -a filename - the filename to append the db to -l# - minimum required sequence length -i - do not check for duplicates -n# - max number of descriptions to report per seq -d# - delimiter to use between consecutive descriptions -p - use database id prefixes from command line
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org perl v5.14.2 2012-03-02 BP_NRDB(1p)
Related Man Pages
bp_dbsplit(1p) - debian
bp_gccalc(1p) - debian
bp_pairwise_kaks(1p) - debian
diff3(1) - v7
diff3(1) - hpux
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