debian man page for bp_local_taxonomydb_query

BP_LOCAL_TAXONOMYDB_QUERY(1p)				User Contributed Perl Documentation			     BP_LOCAL_TAXONOMYDB_QUERY(1p)

NAME
       local_taxonomydb_query - query a local TaxonomyDB for species or taxonid

DESCRIPTION
       This script provides an example implementation of access to a local Taxonomy database implemented with Berkeley DB (DB_File module is
       needed).

       Usage:

	local_taxonomydb_query.PLS: [-v] --nodes nodes.dmp --names names.dmp "Genus1 species1" "Genus2 species2"

       Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump (see Bio::DB::Taxonomy::flatfile for more info) is only necessary
       on the first time running.  This will create the local indexes and may take quite a long time.  However once created, these indexes will
       allow fast access for species to taxon id OR taxon id to species name lookups.

perl v5.14.2							    2012-03-02					     BP_LOCAL_TAXONOMYDB_QUERY(1p)