debian man page for bp_gccalc

Query: bp_gccalc

OS: debian

Section: 1p

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

BP_GCCALC(1p)						User Contributed Perl Documentation					     BP_GCCALC(1p)

NAME
gccalc - GC content of nucleotide sequences
SYNOPSIS
gccalc [-f/--format FORMAT] [-h/--help] filename or gccalc [-f/--format FORMAT] < filename or gccalc [-f/--format FORMAT] -i filename
DESCRIPTION
This scripts prints out the GC content for every nucleotide sequence from the input file.
OPTIONS
The default sequence format is fasta. The sequence input can be provided using any of the three methods: unnamed argument gccalc filename named argument gccalc -i filename standard input gccalc < filename
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason@bioperl.org
HISTORY
Based on script code (see bottom) submitted by cckim@stanford.edu Submitted as part of bioperl script project 2001/08/06 perl v5.14.2 2012-03-02 BP_GCCALC(1p)
Related Man Pages
bp_aacomp(1p) - debian
bp_chaos_plot(1p) - debian
bp_oligo_count(1p) - debian
bp_pairwise_kaks(1p) - debian
bp_split_seq(1p) - debian
Similar Topics in the Unix Linux Community
How to extract a sequence of n lines from a file
Print filename and resolution in wrkng dir
How can I calculate the total of nucleotide in Unix?What command line I should type?
User input in perl code
How to prepend filename to its content without a third file?