CATHPARSE(1e) EMBOSS Manual for Debian CATHPARSE(1e)
NAME
cathparse - Generates DCF file from raw CATH files.
SYNOPSIS
cathparse -listfile infile -domfile infile -namesfile infile -outfile outfile -logfile outfile
cathparse -help
DESCRIPTION
cathparse is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Utils:Database
creation" command group(s).
OPTIONS
Input section
-listfile infile
This option specifies the name of raw CATH classification file (caths.list.vX.X) (input). The raw CATH parsable files (classification
and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: caths.list.v2.4
-domfile infile
This option specifies the name of raw CATH classification file (domlist.vX.X) (input). The raw CATH parsable files (classification and
description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: domlist.v2.4
-namesfile infile
This option specifies the name of raw CATH classification file (CAT.names.all.vX.X) (input). The raw CATH parsable files
(classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4
Output section
-outfile outfile
This option specifies the name of CATH DCF file (domain classification file) (output). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and
CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: Ecath.dat
-logfile outfile
This option specifies the name of the CATHPARSE log file. Default value: cathparse.log
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
cathparse is fully documented via the tfm(1) system.
AUTHOR
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.
DOMAINATRIX 0.1.0+20100721 08/11/2010 CATHPARSE(1e)
