trcyk(1) Infernal Manual trcyk(1)NAMEtrcyk - align sequences to a CM under the TrCYK modelSYNOPSIStrcyk cmfile seqfileDESCRIPTIONtrcyk reads the covariance model (CM) in cmfile and aligns the sequences in seqfile to that CM using the TrCYK model for incomplete data. The output gives the name of each aligned sequence, the score for the alignment, and the alignment itself. The '~' character in the sequence indicates residues that have been treated as missing data. Infernal 1.0.2 October 2009 trcyk(1)