debian man page for trcyk

trcyk(1)							  Infernal Manual							  trcyk(1)

NAME
       trcyk - align sequences to a CM under the TrCYK model

SYNOPSIS
       trcyk cmfile seqfile

DESCRIPTION
       trcyk reads the covariance model (CM) in cmfile and aligns the sequences in seqfile to that CM using the TrCYK model for incomplete data.

       The  output  gives  the	name  of  each	aligned sequence, the score for the alignment, and the alignment itself.  The '~' character in the
       sequence indicates residues that have been treated as missing data.

Infernal 1.0.2							   October 2009 							  trcyk(1)