permuteflipimageorientationaxes(1) debian man page | unix.com

PERMUTEFLIPIMAGEORIENTATIONAXES(1)				   User Commands				PERMUTEFLIPIMAGEORIENTATIONAXES(1)

NAME
       PermuteFlipImageOrientationAxes - part of ANTS registration suite

DESCRIPTION
       Usage:  ./PermuteFlipImageOrientationAxes  ImageDimension   inputImageFile  outputImageFile xperm yperm {zperm}	xflip yflip {zflip}  {Fli-
       pAboutOrigin}

       for 3D:
	      ./PermuteFlipImageOrientationAxes 3  in.nii out.nii   2 0 1  1 1 1

	      would map z=>x, x=>y, y=>z and flip each for 2D:	./PermuteFlipImageOrientationAxes 2  in.nii out.nii   1 0  1  0  would	map  x=>y,
	      y=>x and flip x

	      0 1 2 for permute factors gives no axis permutation 1 2 0 maps y to x,  z to y and x to z the flip values are boolean -  0 1 0 would
	      flip the y-axis only

	      The FlipAboutOrigin boolean lets you flip about the coordinate set in the origin

PermuteFlipImageOrientationAxes 1.9				     May 2012					PERMUTEFLIPIMAGEORIENTATIONAXES(1)