debian man page for ngmx

ngmx(1) 					 GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c					   ngmx(1)

NAME
       ngmx - displays a trajectory

       VERSION 4.5.4-dev-20110404-bc5695c

SYNOPSIS
       ngmx -f traj.xtc -s topol.tpr -n index.ndx -[no]h -[no]version -nice int -b time -e time -dt time

DESCRIPTION
	 ngmx  is the GROMACS trajectory viewer. This program reads a trajectory file, a run input file and an index file and plots a 3D structure
       of your molecule on your standard X Window screen. No need for a high end graphics workstation, it even works on Monochrome screens.

       The following features have been implemented: 3D view, rotation, translation and scaling of your molecule(s), labels on atoms, animation of
       trajectories, hardcopy in PostScript format, user defined atom-filters runs on MIT-X (real X), open windows and motif, user friendly menus,
       option to remove periodicity, option to show computational box.

       Some of the more common X command line options can be used:  -bg,  -fg change colors,  -font fontname changes the font.

FILES
       -f traj.xtc Input
	Trajectory: xtc trr trj gro g96 pdb cpt

       -s topol.tpr Input
	Run input file: tpr tpb tpa

       -n index.ndx Input, Opt.
	Index file

OTHER OPTIONS
       -[no]hno
	Print help info and quit

       -[no]versionno
	Print version info and quit

       -nice int 0
	Set the nicelevel

       -b time 0
	First frame (ps) to read from trajectory

       -e time 0
	Last frame (ps) to read from trajectory

       -dt time 0
	Only use frame when t MOD dt = first time (ps)

KNOWN PROBLEMS
       - Balls option does not work

       - Some times dumps core without a good reason

SEE ALSO
       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

								  Mon 4 Apr 2011							   ngmx(1)