Query: makemat
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Section: 1
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MAKEMAT(1) NCBI Tools User's Manual MAKEMAT(1)NAMEmakemat - convert binary profiles into portable ASCII formSYNOPSISmakemat [-] [-E N] [-G N] [-H] [-P filename] [-S X] [-U str] [-d str] [-z N]DESCRIPTIONmakemat converts a collection of binary profiles, created by the -C option of PSI-BLAST, into portable ASCII form.OPTIONSA summary of options is included below. - Print usage message -E N Cost to extend a gap (default = 1) -G N Cost to open a gap (default = 11) -H Print help; overrides all other arguments -P filename Database name for profile database (default = stdin) -S X Scaling factor for matrix outputs to avoid round-off problems (default = 100) -U str Underlying Matrix (default = BLOSUM62) -d str Underlying sequence database used to make profiles (default = nr) -z N Effective length of the profile database (0 for length of -d option)AUTHORThe National Center for Biotechnology Information.SEE ALSOblast(1), copymat(1), /usr/share/doc/blast2/impala.htmlNCBI2004-06-25 MAKEMAT(1)