debian man page for maf-convert

MAF-CONVERT.PY(1)						   User Commands						 MAF-CONVERT.PY(1)

NAME
       maf-convert.py - Convert MAF-format alignments to tabular format

DESCRIPTION
   Usage:
	      maf-convert.py  --help  maf-convert.py  axt  my-alignments.maf  maf-convert.py blast my-alignments.maf maf-convert.py html my-align-
	      ments.maf maf-convert.py psl my-alignments.maf maf-convert.py sam my-alignments.maf maf-convert.py tab my-alignments.maf

       Read MAF-format alignments & write them in another format.

OPTIONS
       -h, --help
	      show this help message and exit

       -p, --protein
	      assume protein alignments, for psl match counts

       -d, --dictionary
	      include dictionary of sequence lengths in sam format

       -l LINESIZE, --linesize=LINESIZE
	      line length for blast and html formats (default: 60)

maf-convert.py 199						     May 2012							 MAF-CONVERT.PY(1)