debian man page for last-map-probs

LAST-MAP-PROBS.PY(1)						   User Commands					      LAST-MAP-PROBS.PY(1)

NAME
       last-map-probs.py - Add extra column with mapping probabilities

DESCRIPTION
   Usage:
	      last-map-probs.py --help last-map-probs.py [options] lastal-alignments

       Calculate  a  mismap  probability  for each alignment.  This is the probability that the alignment does not reflect the origin of the query
       sequence, assuming that one reported alignment does reflect the origin of each query.

OPTIONS
       -h, --help
	      show this help message and exit

       -m M, --mismap=M
	      don't write alignments with mismap probability > M (default: 0.01)

       -s S, --score=S
	      don't write alignments with score < S (default: 0)

last-map-probs.py 199						     May 2012						      LAST-MAP-PROBS.PY(1)