debian man page for gmxdump

gmxdump(1)					 GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c					gmxdump(1)

NAME
       gmxdump - makes binary files human readable

       VERSION 4.5.4-dev-20110404-bc5695c

SYNOPSIS
       gmxdump	-s  topol.tpr  -f  traj.xtc  -e  ener.edr -cp state.cpt -p topol.top -mtx hessian.mtx -om grompp.mdp -[no]h -[no]version -nice int
       -[no]nr -[no]sys

DESCRIPTION
	gmxdump reads a run input file ( .tpa/ .tpr/ .tpb), a trajectory ( .trj/ .trr/ .xtc), an energy file ( .ene/ .edr), or a checkpoint file (
       .cpt) and prints that to standard output in a readable format.  This program is essential for checking your run input file in case of prob-
       lems.

       The program can also preprocess a topology to help finding problems.  Note that currently setting  GMXLIB is  the  only	way  to  customize
       directories used for searching include files.

FILES
       -s topol.tpr Input, Opt.
	Run input file: tpr tpb tpa

       -f traj.xtc Input, Opt.
	Trajectory: xtc trr trj gro g96 pdb cpt

       -e ener.edr Input, Opt.
	Energy file

       -cp state.cpt Input, Opt.
	Checkpoint file

       -p topol.top Input, Opt.
	Topology file

       -mtx hessian.mtx Input, Opt.
	Hessian matrix

       -om grompp.mdp Output, Opt.
	grompp input file with MD parameters

OTHER OPTIONS
       -[no]hno
	Print help info and quit

       -[no]versionno
	Print version info and quit

       -nice int 0
	Set the nicelevel

       -[no]nryes
	Show index numbers in output (leaving them out makes comparison easier, but creates a useless topology)

       -[no]sysno
	List the atoms and bonded interactions for the whole system instead of for each molecule type

SEE ALSO
       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

								  Mon 4 Apr 2011							gmxdump(1)