debian man page for fastq_to_fasta

FASTQ_TO_FASTA(1)						   User Commands						 FASTQ_TO_FASTA(1)

NAME
       fastq_to_fasta - Convert FASTQ files to FASTA files

DESCRIPTION
       usage: fastq_to_fasta [-h] [-r] [-n] [-v] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu)

       [-h]   = This helpful help screen.

       [-r]   = Rename sequence identifiers to numbers.

       [-n]   = keep sequences with unknown (N) nucleotides.

	      Default is to discard such sequences.

       [-v]   = Verbose - report number of sequences.

       If [-o] is specified,
	      report will be printed to STDOUT.

	      If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.

       [-z]   = Compress output with GZIP.

       [-i INFILE]
	      = FASTA/Q input file. default is STDIN.

	      [-o OUTFILE] = FASTA output file. default is STDOUT.

SEE ALSO
       The quality of this automatically generated manpage might be insufficient.  It is suggested to visit

	      http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.

fastq_to_fasta 0.0.13.2 					     May 2012							 FASTQ_TO_FASTA(1)