debian man page for cmtk-xform2scalar

xform2scalar(1) 				       The Computational Morphometry Toolkit					   xform2scalar(1)

NAME
       xform2scalar - Extract scalar measures from transformations and deformation fields

SYNOPSIS
       xform2scalar InputImage XformList

DESCRIPTION
       This  tool  extracts  scalar  measures from transformations and deformation fields, sampled at grid locations, and writes the results to an
       image. Examples of supported scalar measures are: x,y,z component of the transformation, magnitude  of  the  transformation,  and  Jacobian
       determinants.

OPTIONS
   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --xml
	    Write command line syntax specification in XML markup (for Slicer integration).

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Operating Options
       --mode
	    Mode  of  operation:  type	of scalar measure to be extracted.  Supported values: "x-component", "y-component", "z-component", "magni-
	    tude", where the default is "magnitude", or use one of the following:

	    --x-component
		 X component of transformation vector.

	    --y-component
		 Y component of transformation vector.

	    --z-component
		 Z component of transformation vector.

	    --magnitude
		 Magnitude of the transformation vector.  [This is the default]

       --warp-only, -w
	    Output warp component only (excluding affine).

   Output Options
       --type
	    Scalar data type of output image.  Supported values: "float", "double", where the default is "double", or use one of the following:

	    --float
		 Single-precision float.

	    --double
		 Double-precision float.  [This is the default]

       --output <image-path>, -o <image-path>
	    Output path for image with extracted scalar data.  [Default: NONE]

AUTHORS
       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE
       http://www.fsf.org/licensing/licenses/gpl.html

BUGS
       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS
       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						   xform2scalar(1)