debian man page for cmtk-statistics

statistics(1)					       The Computational Morphometry Toolkit					     statistics(1)

NAME
       statistics - Image statistics

SYNOPSIS
       statistics [options] ImageFile0 [ImageFile1 ...]

DESCRIPTION
       Statistical computations on image pixel intensities, i.e., means and standard deviations

OPTIONS
   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --label, -l
	    Interpret voxel values as labels

       --gray, -g
	    Interpret voxel values as gray values (default) [This is the default]

       --log, -L
	    Apply log() function to data

       --exp, -e
	    Apply exp() function to data

       --num-bins <integer>, -n <integer>
	    Number of histogram bins.  [Default: 256]

       --column, -C
	    Write statistics in column format rather than line format.

       --e-notation, -E
	    Write floating point numbers in #e# notation (i.e., 1e-3 instead of 0.001)

       --mask <string>, -m <string>
	    Analyze region based on binary mask file [Default: disabled]

       --Mask <string>, -M <string>
	    Analyze regions separately based on mask file (label field).  [Default: NONE]

       --mask-output-all-up-to <integer>
	    Output results for all mask values up to given value, even such that do not actually appear in the mask.  [Default: 0]

       --percentile <double>, -p <double>
	    Add value to list of percentile to compute.

AUTHORS
       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE
       http://www.fsf.org/licensing/licenses/gpl.html

BUGS
       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS
       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						     statistics(1)