debian man page for cmtk-sbai

sbai(1) 					       The Computational Morphometry Toolkit						   sbai(1)

NAME
       sbai - Shape-Based Averaging and interpolation of label images

SYNOPSIS
       sbai InputImageVector

DESCRIPTION
       Average segmentations (label fields) using the Euclidean Distance Transform. This tool performs joint interpolation and averaging by inter-
       polating from the EDT. This requires that the inputs are transformations from the same fixed to (not necessarily) different moving  images.
       EDT  computation  is  done  in  the space of each moving image. See http://dx.doi.org/10.1109/TIP.2006.884936 for details of the underlying
       algorithm.

OPTIONS
   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --num-labels <integer>, -n <integer>
	    Number of labels. It is assumed that only values [0..num] occur in the images [Default: 0]

       --padding <float>, -p <float>
	    Padding value in input image [Default: disabled]

       --replace-from <string>
	    Replace from pattern

       --replace-to <string>
	    Replace to pattern

   Output Options
       --output <string>, -o <string>
	    File name for output segmentation file.  [Default: sbai.nii ]

AUTHORS
       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE
       http://www.fsf.org/licensing/licenses/gpl.html

BUGS
       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS
       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							   sbai(1)