Query: cmtk-sba
OS: debian
Section: 1
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
sba(1) The Computational Morphometry Toolkit sba(1)NAMEsba - Shape-based Averaging of label imagesSYNOPSISsba InputImageVectorDESCRIPTIONAverage segmentations (label fields) using the Euclidean Distance Transform. All input images must be in the same space. EDT is computed in this space also. See http://dx.doi.org/10.1109/TIP.2006.884936 for details of the underlying algorithm.OPTIONSGlobal Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Input Options --num-labels <integer>, -n <integer> Number of labels. It is assumed that only values [0..num] occur in the images [Default: 0] --padding <float>, -p <float> Padding value in input image [Default: disabled] Label Combination Options --exclude-outliers, -x Exclude local outliers in the shape-based averaging algorithm. Outliers at each pixel are defined as those input images for which the distance from the nearest pixel with the current label exceeds thresholds computed from the set of distances over all inputs. Output Options --output <string>, -o <string> File name for output segmentation file. [Default: sba.nii ]AUTHORSTorsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. RussakoffLICENSEhttp://www.fsf.org/licensing/licenses/gpl.htmlBUGSReport bugs at http://nitrc.org/projects/cmtk/ACKNOWLEDGMENTSFrom April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 sba(1)
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