probe(1) The Computational Morphometry Toolkit probe(1)
NAME
probe - Probe image data.
SYNOPSIS
probe InputImage
DESCRIPTION
This tool prints pixel values or symbolic labels at a list of user-provided image coordinates.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
--coordinates
Coordinate specification mode. Supported values: "indexed", "absolute", "relative", "physical", or use one of the following:
--indexed
Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1].
--absolute
Use absolute volume coordinates. For each dimension, the valid range is [0,FOV].
--relative
Use relative volume coordinates. For each dimension, the valid range is [0,1].
--physical
Use physical volume coordinates. Each given location is transformed into image coordinates via the inverse of the images's index-
to-physical space matrix.
--interpolation
Image interpolation method. Supported values: "nn", "linear", "cubic", "pv", "sinc-cosine", "sinc-hamming", where the default is
"nn", or use one of the following:
--nn Nearest neighbor interpolation [This is the default]
--linear
Trilinear interpolation
--cubic
Tricubic interpolation
--pv Partial volume interpolation
--sinc-cosine
Sinc interpolation with cosine window
--sinc-hamming
Sinc interpolation with Hamming window
--sinc-window-radius <integer>
Window radius for Sinc interpolation [Default: 3]
--no-reorient
Disable image reorientation into RAS alignment.
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
CMTK 2.2.2 Jul 20 2012 probe(1)
