debian man page for cmtk-probe

probe(1)					       The Computational Morphometry Toolkit						  probe(1)

NAME
       probe - Probe image data.

SYNOPSIS
       probe InputImage

DESCRIPTION
       This tool prints pixel values or symbolic labels at a list of user-provided image coordinates.

OPTIONS
   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --coordinates
	    Coordinate specification mode.  Supported values: "indexed", "absolute", "relative", "physical", or use one of the following:

	    --indexed
		 Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1].

	    --absolute
		 Use absolute volume coordinates. For each dimension, the valid range is [0,FOV].

	    --relative
		 Use relative volume coordinates. For each dimension, the valid range is [0,1].

	    --physical
		 Use physical volume coordinates. Each given location is transformed into image coordinates via the inverse of the images's index-
		 to-physical space matrix.

       --interpolation
	    Image interpolation method.  Supported values: "nn", "linear", "cubic", "pv", "sinc-cosine",  "sinc-hamming",  where  the  default	is
	    "nn", or use one of the following:

	    --nn Nearest neighbor interpolation [This is the default]

	    --linear
		 Trilinear interpolation

	    --cubic
		 Tricubic interpolation

	    --pv Partial volume interpolation

	    --sinc-cosine
		 Sinc interpolation with cosine window

	    --sinc-hamming
		 Sinc interpolation with Hamming window

       --sinc-window-radius <integer>
	    Window radius for Sinc interpolation [Default: 3]

       --no-reorient
	    Disable image reorientation into RAS alignment.

AUTHORS
       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE
       http://www.fsf.org/licensing/licenses/gpl.html

BUGS
       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS
       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							  probe(1)