debian man page for cmtk-lmsba

lmsba(1)					       The Computational Morphometry Toolkit						  lmsba(1)

NAME
       lmsba - Local voting.

SYNOPSIS
       lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2 [...]]

DESCRIPTION
       This tool combines multiple multi-class segmentations from co-registered and reformatted atlases using locally-weighted Shape-Based Averag-
       ing.

OPTIONS
   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --set-padding-value <double>
	    Set padding value for input intensity images. Pixels with this value will be ignored.  [Default: disabled]

   Label Combination Options
       --patch-radius <none>
	    Radius of image patch (in pixels) used for local similarity computation.  [Default: 5]

       --search-radius <none>
	    Search radius for local image patch matching. The algorithm finds the best-matching patch within this  radius  by  exhaustive  search.
	    [Default: 0]

       --no-local-outliers
	    Detect and exclude local outliers in the Shape Based Averaging procedure.

       --no-global-outliers
	    Detect and exclude global outliers by removing poorly correlated atlases prior to local SBA procedure.

   Output Options
       --output <string>, -o <string>
	    File system path for the output image.  [Default: lsbo.nii ]

AUTHORS
       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE
       http://www.fsf.org/licensing/licenses/gpl.html

BUGS
       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS
       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							  lmsba(1)